species:   Clros
pid:       PID2248
parent:    cro-mir-43
paralog:   b
locus:     CADEHS020000527.2:31-108
matures:   ['UGACGAGAGAAGCCGCGAGC', 'UCGUAUCUUGAAUCCG']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000527.2:31-108

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

****************                                        **********************
UCGUAUCUUGAAUCCGCCGUCGCUUGUUAGGCUGCAGGGCGGCUAGCUGGCGUCGGGGUGACGAGAGAAGCCGCGAGC
((((.((((...(((.(((.((((.(((((.((((...))))))))).)))).))).).))...))))....))))..
----------------------------------------------------------UGACGAGAGAAGCCGCGAGC l=20 a=0 c
UCGUAUCUUGAAUCCG-------------------------------------------------------------- l=16 a=0 c*
-------------------UCGCUUGUUAGGCUGCAGG---------------------------------------- l=19 a=1 ma
UCGUAUCUUGAAUCCG-------------------------------------------------------------- l=16 a=0 ma*

-------------------UCGCUUGUUAGGCUGCAGG---------------------------------------- l=19 a=1 (ma)
----------------------------------------------------------UGACGAGAGAAGCCGCGAG- l=19 a=1 

mb-00011
ax-1001001
ku-01
ss-100011101000
fn-011
